This week, I’ve been creating a tabular file with all TCGA-COAD samples at the top of the file as column names, with genes at the sides. I should have a 512 x 60484 matrix file when done. However, with Sol’s help I realized that the file I initially output was actually 512 samples at the top, with only 443 columns after, but still with 60484 lines to the file.<\/p>\n
Therefore, I think there’s something wrong in how I’m categorizing\/organizing the samples.<\/p>\n","protected":false},"excerpt":{"rendered":"
This week, I’ve been creating a tabular file with all TCGA-COAD samples at the top of the file as column names, with genes at the sides. I should have a 512 x 60484 matrix file when done. However, with Sol’s help I realized that the file I initially output was actually 512 samples at the … Continue reading “Week 7: Matrix Files”<\/span><\/a><\/p>\n","protected":false},"author":1725,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[9,11,1],"tags":[],"class_list":["post-412","post","type-post","status-publish","format-standard","hentry","category-cancer","category-summer-research-2018","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/blogs.reed.edu\/compbio\/wp-json\/wp\/v2\/posts\/412","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/blogs.reed.edu\/compbio\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/blogs.reed.edu\/compbio\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/blogs.reed.edu\/compbio\/wp-json\/wp\/v2\/users\/1725"}],"replies":[{"embeddable":true,"href":"https:\/\/blogs.reed.edu\/compbio\/wp-json\/wp\/v2\/comments?post=412"}],"version-history":[{"count":1,"href":"https:\/\/blogs.reed.edu\/compbio\/wp-json\/wp\/v2\/posts\/412\/revisions"}],"predecessor-version":[{"id":416,"href":"https:\/\/blogs.reed.edu\/compbio\/wp-json\/wp\/v2\/posts\/412\/revisions\/416"}],"wp:attachment":[{"href":"https:\/\/blogs.reed.edu\/compbio\/wp-json\/wp\/v2\/media?parent=412"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/blogs.reed.edu\/compbio\/wp-json\/wp\/v2\/categories?post=412"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/blogs.reed.edu\/compbio\/wp-json\/wp\/v2\/tags?post=412"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}