Electronics
- Spartan – Wavefunction, 2020
- Jaguar – Schrödinger, 6/15
- GAMESS – FREE, LMW – Mark Gordon, Iowa State U – 6/15
- Firefly – FREE, WL – Alex Granovsky, Moscow State U – 6/15
Ascalaph (from Agile Molecule) – Interface for Firefly, NWChem & more – 6/15
- more post-HF programs
- NWChem – FREE, LM – 2020
- ADF (in SCM & AMS) – DFT, 2020
- ACES – FREE, R. Bartlett, U Florida, 2020
- Gaussian – 2020
- Columbus – FREE – H. Lischka, F. Plasser, U. Vienna – 2020
- Dalton (& LSDalton) – FREE – 2020
- AMICA – FREE – 9/03
- Q-Chem – 6/15
- Dirac – relativistic all-electron calculations – 6/15
- Molcas – B. Roos, U. Lund, Sweden – 6/15
- Molpro – H-J Werner & P.J. Knowles – 6/15
- Pyquante – FREE, OpenSource – modules for making your own quantum program – 6/15
- Crystal14 – periodic ab initio for solids – 6/15
- ORCA – FREE, L, W – F. Neese & F. Wennmohs, Max Planck Inst. – 7/21
- DFTB+ – FREE, L – T. Fraunheim, U. Bremen – implements semi-empirical DFTB (SCC & non-SCC) – 6/15
- QMcBeaver – FREE, L? – W. Goddard, Caltech – implements Quantum Monte Carlo (QMC) – 6/15
- MOPAC2012 – FREE (to academics), LW – all main group + transition metals (PM6) Stewart Computational Chemistry – 6/15
- ConstruQt (ChemAlive) – Freemium, cloud – PM6 (now, DFT planned) up to 100 heavy, ChemAlive adds user structures to its ever-growing database – 2/20
- MoViPac – FREE – T. Weymuth, ETH – novel approach to normal mode analysis – 6/15 (see DOI 10.1002/jcc.23036 & 10.1002/jcc.23958)
- Computational Chemistry List
(and Archive) – JOIN !!! SUPPORT !!! – 6/15 - EMSL Basis Sets – order form – PNNL – 6/15
Visualization & GUI & Parsing/Conversion
- Spartan – Wavefunction (wikipedia) – 6/17
- Multiwfn – FREE – LWM, multifunctional wavefunction analyzer (MEP, density, AIM, ELF, etc. 2011 DOI 10.1002/jcc.22885) – 6/17
- TopMod – FREE? – platform for electron localization function (ELF) – 6/17
- Molden – FREE – PDB-GAMESS friendly – 6/17
- Convert Jaguar to Molden – FREE – 6/17
- Molekel – FREE, LWM – surfaces, maps, animations – 6/17
- MoCalc2012 – FREE – gui for MOPAC, GAMESS, Firefly, NWChem and ORCA – 6/17
- WebMO – semi-FREE, L – build, setup, analyze calcs over the web using a separate user-installed compute platform: GAMESS, NWChem, ORCA, etc. – 6/17
- PyMOL – semi-FREE, LWM, molecular visualization system (view, render, animate, present) – 6/17
- DeepView Swiss PDB Viewer 4.1 – FREE, LWM – view, superimpose several proteins (and more) – 6/17
- Chimera – FREE, WLM – UCSF, biomolecules – 6/17
- JMol – FREE – open-source browser-based HTML5 viewer and stand-alone Java viewer for chemical structures in 3D – 6/17
- Gabedit – FREE, LWM – GUI for GAMESS, ORCA, etc. – 6/17 (review)
- Facio – FREE, WL – GUI for Firefly, GAMESS, etc. & indispensable for fragment MO analysis in GAMESS – 6/17
- ChemCraft – W – gui for GAMESS, Gaussian input & output, also provides quasi-support for NWChem, ORCA, etc. – 6/17
Electron Density & Orbitals
- Aimpac – FREE – Bader, McMaster U, profile and theory pages, 2/10
- Morphy – FREE (small version only), WL – Popelier PDF book, 2/10
- Xaim – FREE, L – Gaussian-ADF friendly
- Aim2000 – FREE (small version only), W 5/05
- AIMAll – WLM – Keith, 1/14
- AOMix – W – Gorelsky, Stanford, Resolve Spartan or Jaguar wavefns into fragment orbs or do charge decomp analysis, 4/04
- NBO – LW – Weinhold, U Wisconsin, Natural Atomic Orbital analysis of Spartan & Jaguar wavefn, 4/04
- ELF with TopMod – L – instructions, GAMESS, Gaussian-friendly, 8/08
Mechanics
- Spartan – Wavefunction, MMFF
- Macromodel – Schrodinger
- TINKER – FREE – Amber95, Charmm22, , MM3, OPLS
- Ghemical – FREE, L – direct links to MPQC
Dynamics
- GROMACS – FREE – 8/13
- GROMOS
- AMBER 4/23/03
- MOIL – FREE?, LW – Amber, 5/03
- TINKER – FREE – Amber95, Charmm22, MM3, OPLS
- CPMD – FREE – DFT-MD (Carr-Parrinello)
- NAMD – FREE – U Illinois, parallel object-oriented scalable, visualize with Visual MD (FREE)
- mdxvu – FREE?, L – MD visualization, Amber-Tinker friendly
- Molecular Monte Carlo – FREE – Cooper Union, tutorials, software, links
- Mol Dynamics Simulations
Charmm tutorial – FREE – detailed tutorial, general theory & program - nMOLDYN – FREE, L/Python – trajectory analysis, neutron scattering simulations, Charm-NAMD-MMTK friendly
- Stark Design’s Atomic Microscope – WM – 8/10
- Concord Modeling Workbench – FREE, WML, Java-based – 8/10
- Molecular Modeling Toolkit – FREE, OpenSource – K. Hinsen, (CEA/CNRS, France), Python modules, Amber friendly 5/8/05
Drawing
- Review of Chemical Drawing Programs (Windows), T.E. Gunda, last updated Jan 2012
- ChemDoodle – WML iOS Android – iChemLabs, 9/11
- KnowItAll Academic Edition – EXCELLENT + FREE (for academics, registration reqd) W – BioRad, suite includes drawing program, 6/13
- ChemBioDraw – PerkinElmer Informatics, 3/12
- Accelrys Draw – EXCELLENT + FREE (for academics, registration reqd), WM – Accelrys, 6/13
- ChemSketch 12 – EXCELLENT + FREE, W – ACD Labs, 8/10
- ACD/iLabs – FREE, Java-based (get IUPAC names in your browser), ACD Labs, 9/18
- JChemPaint – FREE, Java-based open-source, 3/12
- MarvinSketch – FREE (for academics), Java-based (draw, copy/paste to other docs, & print from your web browser) – ChemAxon, 6/13
Misc Links
- Vigyaan CD – all-in-one-CD modeling kit – 8/14
- Linux 4 Chemistry – FREE, share & commercial, 8/14
- KiSThelP – FREE, open source, cross-platform – estimate thermo/kinetic props from electronic structure data: Gaussian, GAMESS, NWChem, 8/14
- Linux and Chemistry
– FREE, share & commercial, 8/14 - OpenScience Project – FREEware, 8/14
- Open3DQSAR – FREE?, WML – accepts 3D fields from multiple programs, 8/14
- SourceForge – open source software, 8/14